Long ago, the mid-1980s to be precise, I covered a Colorado dispute involving religious freedom. The spark that lit the fuse was a state tax official's decision to rule that the "worship" that took place inside church doors was "religious," and thus tax exempt, while what happened inside non-profit religious ministries (think day-care centers) was not truly "religious."
This claim produced a scream of legal rage from leaders in religious denominations and groups, both on the left and right. Everyone agreed that state officials had no right to get entangled (there is that word again) in determining what was "religious" and what was not (outside the usual limits of fraud, profit and clear threat to life and health). The state was not supposed to decide that "worship" was religious, while caring for children (and teaching them Bible lessons) was not.
Obviously, America has evolved since then, especially on issues linked to the doctrines of the Sexual Revolution. The latest round of Obamacare debates at the U.S. Supreme Court seemed to have focused on this question: Can churches and other houses of worship decide what is "sin" for members of their voluntary associations, while doctrinally defined ministries and schools cannot make this kind of ruling?
I would add to that last sentence: These religious ministries and schools cannot defend their own doctrines defining "sin," even for employees and/or students who have -- to join this religious association -- voluntarily signed covenants in which they promise to live by these doctrines (or at least not to publicly attack them). In other words, the state now gets to define what is "sin" for these employees/students, not the doctrinally defined ministries and schools they have voluntarily joined.
I cannot find a mainstream news report about this Obamacare debate that even mentions these doctrinal covenants, so it is safe to assume (a) that journalists do not know (or care) that they exist or (b) that the freedom to form voluntary associations no longer applies to religious groups, outside of actual houses of worship.
How do you read this passage from The New York Times, containing a key quote from Justice Anthony Kennedy?
On this point, at least, Justice Kennedy seemed to take the government’s side. “It’s going to be very difficult for this court to write an opinion which says that once you have a church organization” entitled to an exemption, “you have to treat a religious university the same.”

